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Decoding a DNA Sequence with Java

Students will write a Java program to read a DNA sequence from either the keyboard or a text file. Then they will display the protein sequence that is produced. Students will simulate the mutation of a single location in the DNA sequence to determine the effects of that mutation. Finally, students will look for the locations of a specific DNA sequence. Read more about Decoding a DNA Sequence with Java

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Computation for DNA Fragment Assembly

This activity introduces students to the computation involved in reassembling sequenced DNA to reconstruct the original gene. The activity enhances a reading and activity from Professor Ann Condon of the University of British Columbia that discusses the genetics and programming concepts. This extends those activitities by including some actual Python programming exercises and examples. Read more about Computation for DNA Fragment Assembly

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Process Coding Sequences of Transcripts Lab

Students will complete a Java OOP program that consists of six classes which represent a Gene, a Transcript, and Dictionaries. The Dictionary classes can be used for DNA to RNA transcription and RNA to Protein translation. The Transcript class will contain methods to transcript a DNA coding sequence into an mRNA sequence and to translate an mRNA sequence into a protein. Read more about Process Coding Sequences of Transcripts Lab

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A Progression of Computer Science Problems with Bioinformatics as the Context

This activity, a question set for teaching basic computer science ideas via bioinformatics, provides a variety of problems that build on students abilities in both computer science and bioinformatics. The questions get progressively more difficult and build off previous problems although any could be used as a stand alone as well.  Read more about A Progression of Computer Science Problems with Bioinformatics as the Context

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OMIM......Oh My: Using The Online Mendalian Inheritance and Man Database

This activity is designed to introduce students to The Online Mendelian Inheritance in Man (OMIM) database.  Students will start by analyzing a patient's symptoms and correctly identifying the genetic disorder that is causing the problem.  Finally, the student will use OMIM to gather information about that specific genetic disorder. Read more about OMIM......Oh My: Using The Online Mendalian Inheritance and Man Database

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Inquiry Lab: Identifying Bacteria using Morphology, Physiology, and Molecular Data

Bacteria are prokaryotic organisms that can be found almost anywhere on earth.  Identifying prokaryotic species can be difficult in a high school lab.  The purpose of this lab it to use information that is known about bacteria cell wall composition, size, shape, arrangements, enzymatic activity, colony growth, and molecular data (DNA) to identify species (or group of prokaryotes) of known and Read more about Inquiry Lab: Identifying Bacteria using Morphology, Physiology, and Molecular Data

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